Receptor agonists useful for the treatment of pain

ABSTRACT

This invention provides a method of treating a subject suffering from an abnormality which comprises administering to the subject an amount of a SNORF11 receptor agonist effective to treat the subject&#39;s abnormality. This invention further provides a method of treating pain, particularly chronic pain, chronic inflammatory pain and arthritic pain, which comprises administering to the subject an amount of a SNORF11 receptor agonist effective to treat the subject&#39;s pain.

[0001] This application is a continuation-in-part of U.S. Ser. No. 09/897,201, filed Jul. 2, 2001, which is a continuation-in-part of U.S. Ser. No. 09/266,127, filed Mar. 10, 1999, the contents of which are herein incorporated by reference. Throughout this application various publications are referred to by partial citations within parenthesis. Full citations for these publications may be found at the end of the specification immediately preceding the claims. The disclosures of these publications, in their entireties, are hereby incorporated by reference into this application in order to more fully describe the state of the art to which the invention pertains.

BACKGROUND OF THE INVENTION

[0002] Neuroregulators comprise a diverse group of natural products that subserve or modulate communication in the nervous system. They include, but are not limited to, neuropeptides, amino acids, biogenic amines, lipids and lipid metabolites, and other metabolic byproducts. Many of these neuroregulator substances interact with specific cell surface receptors which transduce signals from the outside to the inside of the cell. G-protein coupled receptors (GPCRs) represent a major class of cell surface receptors with which many neurotransmitters interact to mediate their effects. GPCRs are characterized by seven membrane-spanning domains and are coupled to their effectors via G-proteins linking receptor activation with intracellular biochemical sequelae such as stimulation of adenylyl cyclase. While the structural motifs that characterize a GPCR can be recognized in the predicted amino acid sequence of a novel receptor, the endogenous ligand that activates the GPCR cannot necessarily be predicted from its primary structure. Thus, a novel receptor sequence may be designated as an orphan GPCR when it possesses the structural motif characteristic of a G-protein coupled receptor, but its endogenous ligand has not yet been defined.

[0003] This application describes the identification of several peptide agonists for the GPCR designated SNORF11 receptor, and further describes a novel therapeutic use for such agonists, namely the treatment of pain.

[0004] As used in this invention, the term “agonist” refers to a compound which binds to, and increases activity of, a receptor as compared with the activity of the receptor in the absence of any agonist.

[0005] The localization and biological activities of the SNORF11 receptor and its ligand suggest that the modulation of SNORF11 receptor activity may be useful in a number of therapeutic applications. Agonists of the SNORF11 receptor have been previously characterized as having cancer metastasis suppressing activity (Ohtaki et al, 2001). SNORF11 receptor ligands may also play a role in cognition, movement and balance, inherited neurological diseases, and endocrine function (Muir et al, 2001; Kotani et al, 2001).

[0006] The subject invention describes agonists that activate the SNORF11 receptor and are useful as analgesics for the treatment of pain, particularly chronic pain, chronic inflammatory pain and arthritic pain.

SUMMARY OF THE INVENTION

[0007] This invention provides a recombinant nucleic acid comprising a nucleic acid encoding a mammalian SNORF11 receptor, wherein the mammalian receptor-encoding nucleic acid hybridizes under high stringency conditions to (a) a nucleic acid encoding a human SNORF11 receptor and having a sequence identical to the sequence of the human SNORF11 receptor-encoding nucleic acid contained in plasmid pEXJRHT3T7-hSNORF11-f (ATCC Accession No. 203806) or (b) a nucleic acid encoding a rat SNORF11 receptor and having a sequence identical to the sequence of the rat SNORF11 receptor-encoding nucleic acid contained in plasmid pcDNA3.1-rSNORF11-f (ATCC Accession No. 203807).

[0008] This invention further provides a recombinant nucleic acid comprising a nucleic acid encoding a human SNORF11 receptor, wherein the human SNORF11 receptor comprises an amino acid sequence identical to the sequence of the human SNORF11 receptor encoded by the shortest open reading frame indicated in FIGS. 1A-1B (SEQ ID NO: 1).

[0009] This invention also provides a recombinant nucleic acid comprising a nucleic acid encoding a rat SNORF11 receptor, wherein the rat SNORF11 receptor comprises an amino acid sequence identical to the sequence of the rat SNORF11 receptor encoded by the shortest open reading frame indicated in FIGS. 3A-3B (SEQ ID NO: 3).

BRIEF DESCRIPTION OF THE FIGURES

[0010] FIGS. 1A-1B

[0011] Nucleotide sequence including sequence encoding a human SNORF11 receptor (SEQ ID NO: 1). Putative open reading frames including the shortest open reading frame are indicated by underlining one start (ATG) codon (at positions 1-3) and the stop codon (at positions 1195-1197).

[0012] FIGS. 2A-2B

[0013] Deduced amino acid sequence (SEQ ID NO: 2) of the human SNORF11 receptor encoded by the longest open reading frame indicated in the nucleotide sequence shown in FIGS. 1A-1B (SEQ ID NO: 1). The seven putative transmembrane (TM) regions are underlined.

[0014] FIGS. 3A-3B

[0015] Nucleotide sequence including sequence encoding a rat SNORF11 receptor (SEQ ID NO: 3). Putative open reading frames including the shortest open reading frame are indicated by underlining one start (ATG) codon (at positions 38-40) and the stop codon (at positions 1226-1228). In addition, partial 5′ and 3′ untranslated sequences are shown.

[0016] FIGS. 4A-4B

[0017] Deduced amino acid sequence (SEQ ID NO: 4) of the rat SNORF11 receptor encoded by the longest open reading frame indicated in the nucleotide sequence shown in FIGS. 3A-3B (SEQ ID NO: 3). The seven putative transmembrane (TM) regions are underlined.

DETAILED DESCRIPTION OF THE INVENTION

[0018] This invention provides a recombinant nucleic acid comprising a nucleic acid encoding a mammalian SNORF11 receptor, wherein the mammalian receptor-encoding nucleic acid hybridizes under high stringency conditions to (a) a nucleic acid encoding a human SNORF11 receptor and having a sequence identical to the sequence of the human SNORF11 receptor-encoding nucleic acid contained in plasmid pEXJRHT3T7-hSNORF11-f (ATCC Accession No. 203806) or (b) a nucleic acid encoding a rat SNORF11 receptor and having a sequence identical to the sequence of the rat SNORF11 receptor-encoding nucleic acid contained in plasmid pcDNA3.1-rSNORF11-f (ATCC Accession No. 203807).

[0019] This invention further provides a recombinant nucleic acid comprising a nucleic acid encoding a human SNORF11 receptor, wherein the human SNORF11 receptor comprises an amino acid sequence identical to the sequence of the human SNORF11 receptor encoded by the shortest open reading frame indicated in FIGS. 1A-1B (SEQ ID NO: 1).

[0020] This invention also provides a recombinant nucleic acid comprising a nucleic acid encoding a rat SNORF11 receptor, wherein the rat SNORF11 receptor comprises an amino acid sequence identical to the sequence of the rat SNORF11 receptor encoded by the shortest open reading frame indicated in FIGS. 3A-3B (SEQ ID NO: 3).

[0021] Plasmid pEXJRHT3T7-hSNORF11-f and plasmid pcDNA3.1-rSNORF11-f were both deposited on Mar. 3, 1999, with the American Type Culture Collection (ATCC), 10801 University Blvd., Manassas, Va. 20110-2209, U.S.A. under the provisions of the Budapest Treaty for the International Recognition of the Deposit of Microorganisms for the Purposes of Patent Procedure and were accorded ATCC Accession Nos. 203806 and 203807, respectively.

[0022] Hybridization methods are well known to those of skill in the art. For purposes of this invention, hybridization under high stringency conditions means hybridization performed at 40° C. in a hybridization buffer containing 50% formamide, 5× SSC, 7 mM Tris, 1× Denhardt's, 25 μg/ml salmon sperm DNA; wash at 50° C. in 0.1× SSC, 0.1% SDS.

[0023] The nucleic acids of this invention may be used as probes to obtain homologous nucleic acids from other species and to detect the existence of nucleic acids having complementary sequences in samples.

[0024] The nucleic acids may also be used to express the receptors they encode in transfected cells.

[0025] Also, use of the receptor encoded by the SNORF11 receptor nucleic acid sequence enables the discovery of the endogenous ligand.

[0026] The use of a constitutively active receptor encoded by SNORF11 either occurring naturally without further modification or after appropriate point mutations, deletions or the like, allows screening for antagonists and in vivo use of such antagonists to attribute a role to receptor SNORF11 without prior knowledge of the endogenous ligand.

[0027] Use of the nucleic acids further enables elucidation of possible receptor diversity and of the existence of multiple subtypes within a family of receptors of which SNORF11 is a member.

[0028] In order to enrich our ligand collection with peptidic ligands for GPCRs, a datamining strategy designed to identify potential precursors for novel RFamide peptides was applied to the SwissProt protein database. The stringent search resulted in a pool of potential precursors, including the malignant melanoma metastasis-suppressor KiSS-1 (SwissProt Accession No. Q15726). Although several studies of this protein had been reported (Lee et al., 1996; Lee and Welch, 1997 and 1997b), there was no information suggesting that the protein might be processed to liberate biologically active peptide fragments. Nevertheless, by examining the protein for potential cleavage sites, we were able to predict the potential processing of several peptides ending in RFamide.

[0029] Three KiSS-1 peptide fragments were synthesized, tested in a functional assay of the human SNORF11 receptor as described hereinafter, and identified as agonists at the human SNORF11 receptor. The peptides are fragments of the KiSS-1 precursor designated: KiSS-1 (93-122), KiSS-1 (106-122), and KiSS-1 (108-122).

[0030] Two KiSS-1 peptide fragments, namely KiSS-1 (106-122) and KiSS-1 (108-122), were tested in the Randall-Selitto model of hyperalgesia in rats (Price, et al., 1996). Intrathecal administration (i.t.) of 200 nmol KiSS-1 (106-122) peptide or KiSS-1 (108-122) peptide elicits a reduction in the vocalization threshold of animal subjects. From the Randall-Selitto model, the results indicate that the in vivo administration of both of these peptidic ligands of the human SNORF11 receptor are effective in reducing hyperalgesia secondary to an inflammatory response, and therefore agonists that activate the SNORF11 receptor are useful as analgesics for the treatment of arthritic pain. (See also Dubinsky, et al., 1987).

[0031] Additional examples of peptide agonists include, but are not limited to, KiSS-1 (68-122), KiSS-1 (94-122), KiSS-1 (107-122), KiSS-1 (109-122), KiSS-1 (112-122), and KiSS-1 (114-122).

[0032] The peptides of the present invention are examples of gene-products of the KiSS-1 precursor. Each peptide ends with the amino acid glycine (G) at the C-terminus, for example at amino acid position 122. Processing of peptides followed by oxidative cleavage of the glycine N—C alpha bond results in, for example, KiSS-1 (X-121) amide, wherein the C-terminal glycine is the amide (—NH₂) donor. Therefore, it is understood that peptides designated KiSS-1 (X-122), for example, comprise peptides which can also be described as KiSS (X-121) amide.

[0033] Agonists that activate the SNORF11 receptor are useful as analgesics for the treatment of several types of pain, including chronic pain, chronic inflammatory pain, arthritic pain, pain secondary to acute or chronic inflammation, post-operative pain, and neuropathic pain.

[0034] Finally, it is contemplated that this receptor will serve as a valuable tool for designing drugs for treating various pathophysiological conditions such as chronic and acute inflammation, arthritis, autoimmune diseases, transplant rejection, graft vs. host disease, bacterial, fungal, protozoan and viral infections, septicemia, AIDS, pain, psychotic and neurological disorders, including anxiety, depression, schizophrenia, dementia, mental retardation, memory loss, epilepsy, locomotor problems, respiratory disorders, asthma, eating/body weight disorders including obesity, bulimia, diabetes, anorexia, nausea, hypertension, hypotension, vascular and cardiovascular disorders, ischemia, stroke, cancers, ulcers, urinary retention, sexual/reproductive disorders, circadian rhythm disorders, renal disorders, bone diseases including osteoporosis, benign prostatic hypertrophy, gastrointestinal disorders, nasal congestion, allergies, Parkinson's disease, Alzheimer's disease, among others and diagnostic assays for such conditions.

[0035] Selectivity of the Responses Mediated by SNORF11 Agonists

[0036] KiSS-1 (106-122) peptide and KiSS-1 (108-122) peptide were able to activate a receptor-mediated intracellular response in cells expressing the human recombinant neuropeptide FF1 (NPFF1) and neuropeptide FF2 (NPFF2) receptors (data not shown). These observations could be taken to suggest that the antinociceptive effects of KiSS-1 (106-122) and KiSS-1 (108-122) in the Randall-Sellito model could be attributed to the activation of either SNORF11, NPFF1, or NPFF2 receptors. However, in a separate study, the intrathecal administration of neuropeptide FF showed no antinociceptive effects in the Randall-Sellito model (data not shown), indicating that the effects of KiSS-1 peptides in the Randall-Sellito model were specifically related to their activation of SNORF11, and not of NPFF1 or NPFF2 receptors.

[0037] Methods of transfecting cells e.g. mammalian cells, with such nucleic acid to obtain cells in which the receptor is expressed on the surface of the cell are well known in the art. (See, for example, U.S. Pat. Nos. 5,053,337; 5,155,218; 5,360,735; 5,472,866; 5,476,782; 5,516,653; 5,545,549; 5,556,753; 5,595,880; 5,602,024; 5,639,652; 5,652,113; 5,661,024; 5,766,879; 5,786,155; and 5,786,157, the disclosures of which are hereby incorporated by reference in their entireties into this application.)

[0038] Such transfected cells may also be used to test compounds and screen compound libraries to obtain compounds which bind to the orphan SNORF11 receptor, as well as compounds which activate or inhibit activation of functional responses in such cells, and therefore are likely to do so in vivo. (See, for example, U.S. Pat. Nos. 5,053,337; 5,155,218; 5,360,735; 5,472,866; 5,476,782; 5,516,653; 5,545,549; 5,556,753; 5,595,880; 5,602,024; 5,639,652; 5,652,113; 5,661,024; 5,766,879; 5,786,155; and 5,786,157, the disclosures of which are hereby incorporated by reference in their entireties into this application.)

[0039] The term “agonist” is used throughout this application to indicate any peptide or non-peptidyl compound which increases the activity of any of the polypeptides of the subject invention. The term “antagonist” is used throughout this application to indicate any peptide or non-peptidyl compound which decreases the activity of any of the polypeptides of the subject invention.

[0040] Furthermore, as used herein, the phrase “pharmaceutically acceptable carrier” means any of the standard pharmaceutically acceptable carriers. Examples include, but are not limited to, phosphate buffered saline, physiological saline, water, and emulsions, such as oil/water emulsions.

[0041] This invention provides a process for identifying a chemical compound which specifically binds to a mammalian SNORF11 receptor which comprises contacting cells containing DNA encoding, and expressing on their cell surface, the mammalian SNORF11 receptor, wherein such cells do not normally express the mammalian SNORF11 receptor, with the compound under conditions suitable for binding, and detecting specific binding of the chemical compound to the mammalian SNORF11 receptor.

[0042] Furthermore, this invention provides a process for identifying a chemical compound which specifically binds to a mammalian SNORF11 receptor which comprises contacting a membrane preparation from cells containing DNA encoding, and expressing on their cell surface, the mammalian SNORF11 receptor, wherein such cells do not normally express the mammalian SNORF11 receptor, with the compound under conditions suitable for binding, and detecting specific binding of the chemical compound to the mammalian SNORF11 receptor.

[0043] Moreover, this invention provides a process involving competitive binding for identifying a chemical compound which specifically binds to a mammalian SNORF11 receptor which comprises separately contacting cells expressing on their cell surface the mammalian SNORF11 receptor, wherein such cells do not normally express the mammalian SNORF11 receptor, with both the chemical compound and a second chemical compound known to bind to the receptor, and with only the second chemical compound, under conditions suitable for binding of such compounds to the receptor, and detecting specific binding of the chemical compound to the mammalian SNORF11 receptor, a decrease in the binding of the second chemical compound to the mammalian SNORF11 receptor in the presence of the chemical compound being tested indicating that such chemical compound binds to the mammalian SNORF11 receptor.

[0044] This invention also provides a process involving competitive binding for identifying a chemical compound which specifically binds to a mammalian SNORF11 receptor which comprises separately contacting a membrane preparation from cells expressing on their cell surface the mammalian SNORF11 receptor, wherein such cells do not normally express the mammalian SNORF11 receptor, with both the chemical compound and a second chemical compound known to bind to the receptor, and with only the second chemical compound, under conditions suitable for binding of such compounds to the receptor, and detecting specific binding of the chemical compound to the mammalian SNORF11 receptor, a decrease in the binding of the second chemical compound to the mammalian SNORF11 receptor in the presence of the chemical compound being tested indicating that such chemical compound binds to the mammalian SNORF11 receptor.

[0045] In certain embodiments, the mammalian SNORF11 receptor is a human SNORF11 receptor. In another embodiment, the cell is a mammalian cell. In another embodiment, the mammalian cell is non-neuronal in origin. In another embodiment, the non-neuronal cell is a COS-7 cell, a 293 human embryonic kidney cell, a LM(tk−) cell or an NIH-3T3 cell.

[0046] This invention further provides a method of screening a plurality of chemical compounds not known to bind to a mammalian SNORF11 receptor to identify a compound which specifically binds to the mammalian SNORF11 receptor, which comprises (a) contacting cells transfected with, and expressing, DNA encoding the mammalian SNORF11 receptor with a compound known to bind specifically to the mammalian SNORF11 receptor; (b) contacting the cells of step (a) with the plurality of compounds not known to bind specifically to the mammalian SNORF11 receptor, under conditions permitting binding of compounds known to bind to the mammalian SNORF11 receptor; (c) determining whether the binding of the compound known to bind to the mammalian SNORF11 receptor is reduced in the presence of the plurality of compounds, relative to the binding of the compound in the absence of the plurality of compounds; and if so (d) separately determining the binding to the mammalian SNORF11 receptor of each compound included in the plurality of compounds, so as to thereby identify any compound included therein which specifically binds to the mammalian SNORF11 receptor.

[0047] This invention still further provides a method of screening a plurality of chemical compounds not known to bind to a mammalian SNORF11 receptor to identify a compound which specifically binds to the mammalian SNORF11 receptor, which comprises (a) contacting a membrane preparation from cells transfected with, and expressing, DNA encoding the mammalian SNORF11 receptor with the plurality of compounds not known to bind specifically to the mammalian SNORF11 receptor under conditions permitting binding of compounds known to bind to the mammalian SNORF11 receptor; (b) determining whether the binding of a compound known to bind to the mammalian SNORF11 receptor is reduced in the presence of the plurality of compounds, relative to the binding of the compound in the absence of the plurality of compounds; and if so (c) separately determining the binding to the mammalian SNORF11 receptor of each compound included in the plurality of compounds, so as to thereby identify any compound included therein which specifically binds to the mammalian SNORF11 receptor.

[0048] This invention additionally provides a process for determining whether a chemical compound is a mammalian SNORF11 receptor agonist which comprises contacting cells transfected with and expressing DNA encoding the mammalian SNORF11 receptor with the compound under conditions permitting the activation of the mammalian SNORF11 receptor, and detecting any increase in mammalian SNORF11 receptor activity, so as to thereby determine whether the compound is a mammalian SNORF11 receptor agonist.

[0049] This invention further provides a process for determining whether a chemical compound is a mammalian SNORF11 receptor antagonist which comprises contacting cells transfected with and expressing DNA encoding the mammalian SNORF11 receptor with the compound in the presence of a known mammalian SNORF11 receptor agonist, under conditions permitting the activation of the mammalian SNORF11 receptor, and detecting any decrease in mammalian SNORF11 receptor activity, so as to thereby determine whether the compound is a mammalian SNORF11 receptor antagonist.

[0050] In certain embodiments, the mammalian SNORF11 receptor is a human SNORF11 receptor. In another embodiment, the cell is a mammalian cell. In another embodiment, the mammalian cell is non-neuronal in origin. In another embodiment, the non-neuronal cell is a COS-7 cell, a 293 human embryonic kidney cell, a LM(tk−) cell or an NIH-3T3 cell.

[0051] Moreover, this invention provides a process for determining whether a chemical compound specifically binds to and activates a mammalian SNORF11 receptor, which comprises contacting cells producing a second messenger response and expressing on their cell surface the mammalian SNORF11 receptor, wherein such cells do not normally express the mammalian SNORF11 receptor, with the chemical compound under conditions suitable for activation of the mammalian SNORF11 receptor, and measuring the second messenger response in the presence and in the absence of the chemical compound, a change in the second messenger response in the presence of the chemical compound indicating that the compound activates the mammalian SNORF11 receptor.

[0052] This invention further provides a process for determining whether a chemical compound specifically binds to and inhibits activation of a mammalian SNORF11 receptor, which comprises separately contacting cells producing a second messenger response and expressing on their cell surface the mammalian SNORF11 receptor, wherein such cells do not normally express the mammalian SNORF11 receptor, with both the chemical compound and a second chemical compound known to activate the mammalian SNORF11 receptor, and with only the second chemical compound, under conditions suitable for activation of the mammalian SNORF11 receptor, and measuring the second messenger response in the presence of only the second chemical compound and in the presence of both the second chemical compound and the chemical compound, a smaller change in the second messenger response in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound indicating that the chemical compound inhibits activation of the mammalian SNORF11 receptor.

[0053] In an embodiment of the present invention, the second chemical compound is a peptide agonist. Examples of peptide agonists include, but are not limited to, KiSS-1 (93-122), KiSS-1 (106-122), KiSS-1 (108-122), KiSS-1 (68-122), KiSS-1 (94-122), KiSS-1 (107-122), KiSS-1 (109-122), KiSS-1 (112-122), and KiSS-1 (114-122). It is understood that peptides designated KiSS-1 (X-122) comprise peptides also described as KiSS (X-121) amide.

[0054] In one embodiment, the second messenger response comprises chloride channel activation and the change in second messenger response is a smaller increase in the level of chloride current in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound. In another embodiment, the second messenger response comprises change in intracellular calcium levels and the change in second messenger response is a smaller increase in the measure of intracellular calcium in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound. In another embodiment, the second messenger response comprises release of inositol phosphate and the change in second messenger response is a smaller increase in the level of inositol phosphate in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound.

[0055] In one embodiment, the second messenger response comprises activation of MAP kinase and the change in second messenger response is a smaller increase in the level of MAP kinase activation in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound. In another embodiment, the second messenger response comprises change in cAMP levels and the change in second messenger response is a smaller change in the level of cAMP in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound. In another embodiment, the second messenger response comprises release of arachidonic acid and the change in second messenger response is an increase in the level of arachidonic acid levels in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound. In a further embodiment, the second messenger response comprises GTPγS ligand binding and the change in second messenger is a smaller increase in GTPγS ligand binding in the presence of both the chemical compound and the second chemical compound than in the presence of only the second chemical compound.

[0056] In certain embodiments, the mammalian SNORF11 receptor is a human SNORF11 receptor. In another embodiment, the cell is a mammalian cell. In another embodiment, the mammalian cell is non-neuronal in origin. In another embodiment, the non-neuronal cell is a COS-7 cell, a 293 human embryonic kidney cell, a LM(tk−) cell or an NIH-3T3 cell.

[0057] This invention provides a method of screening a plurality of chemical compounds not known to activate a mammalian SNORF11 receptor to identify a compound which activates the mammalian SNORF11 receptor which comprises: (a) contacting cells transfected with and expressing the mammalian SNORF11 receptor with the plurality of compounds not known to activate the mammalian SNORF11 receptor, under conditions permitting activation of the mammalian SNORF11 receptor; (b) determining whether the activity of the mammalian SNORF11 receptor is increased in the presence of one or more of the compounds; and if so (c) separately determining whether the activation of the mammalian SNORF11 receptor is increased by any compound included in the plurality of compounds, so as to thereby identify each compound which activates the mammalian SNORF11 receptor.

[0058] This invention further provides a method of screening a plurality of chemical compounds not known to inhibit the activation of a mammalian SNORF11 receptor to identify a compound which inhibits the activation of the mammalian SNORF11 receptor, which comprises: (a) contacting cells transfected with and expressing the mammalian SNORF11 receptor with the plurality of compounds in the presence of a known mammalian SNORF11 receptor agonist, under conditions permitting activation of the mammalian SNORF11 receptor; (b) determining whether the extent or amount of activation of the mammalian SNORF11 receptor is reduced in the presence of one or more of the compounds, relative to the extent or amount of activation of the mammalian SNORF11 receptor in the absence of such one or more compounds; and if so (c) separately determining whether each such compound inhibits activation of the mammalian SNORF11 receptor for each compound included in the plurality of compounds, so as to thereby identify any compound included in such plurality of compounds which inhibits the activation of the mammalian SNORF11 receptor.

[0059] In certain embodiments, the mammalian SNORF11 receptor is a human SNORF11 receptor. In another embodiment, the cell is a mammalian cell. In another embodiment, the mammalian cell is non-neuronal in origin. In another embodiment, the non-neuronal cell is a COS-7 cell, a 293 human embryonic kidney cell, a LM(tk−) cell or an NIH-3T3 cell.

[0060] In an embodiment of the present invention, the second chemical compound is a peptide agonist. Examples of peptide agonists include, but are not limited to, KiSS-1 (93-122), KiSS-1 (106-122), KiSS-1 (108-122), KiSS-1 (68-122), KiSS-1 (94-122), KiSS-1 (107-122), KiSS-1 (109-122), KiSS-1 (112-122), and KiSS-1 (114-122). It is understood that peptides designated KiSS-1 (X-122) comprise peptides also described as KiSS (X-121) amide.

[0061] This invention also provides a composition, for example, a pharmaceutical composition, comprising a compound identified by a method according to this invention in an amount effective to increase mammalian SNORF11 receptor activity and a carrier, for example, a pharmaceutically acceptable carrier.

[0062] This invention still further provides a composition, for example, a pharmaceutical composition, comprising a compound identified by a method according to this invention in an amount effective to decrease mammalian SNORF11 receptor activity and a carrier, for example, a pharmaceutically acceptable carrier.

[0063] This invention also provides a process for making a composition of matter which specifically binds to a mammalian SNORF11 receptor which comprises identifying a chemical compound using a process in accordance with this invention and then synthesizing the chemical compound or a novel structural and functional analog or homolog thereof.

[0064] In one embodiment, the mammalian SNORF11 receptor is a human SNORF11 receptor.

[0065] This invention further provides a process for preparing a composition, for example a pharmaceutical composition which comprises admixing a carrier, for example, a pharmaceutically acceptable carrier, and a pharmaceutically effective amount of a chemical compound identified by a process in accordance with this invention or a novel structural and functional analog or homolog thereof.

[0066] This invention further provides a process for preparing a composition, for example a pharmaceutical composition which comprises identifying a chemical compound by a process in accordance with this invention or a novel structural and functional analog or homolog thereof, recovering the chemical compound free of any receptor, and then admixing a carrier, for example, a pharmaceutically acceptable carrier, and a pharmaceutically effective amount of the chemical compound.

[0067] In one embodiment, the chemical compound is a SNORF11 receptor agonist.

[0068] In the present invention the term “pharmaceutically acceptable carrier” is any pharmaceutical carrier known to those of ordinary skill in the art as useful in formulating pharmaceutical compositions.

[0069] In an embodiment of the present invention, the pharmaceutical carrier may be a liquid and the pharmaceutical composition would be in the form of a solution. In another embodiment, the pharmaceutically acceptable carrier is a solid and the composition is in the form of a powder or tablet. In a further embodiment, the pharmaceutical carrier is a gel and the composition is in the form of a suppository or cream. In a further embodiment the compound may be formulated as a part of a pharmaceutically acceptable transdermal patch. In yet a further embodiment, the compound may be delivered to the subject by means of a spray or inhalant.

[0070] A solid carrier can include one or more substances which may also act as endogenous carriers (e.g. nutrient or micronutrient carriers), flavoring agents, lubricants, solubilizers, suspending agents, fillers, glidants, compression aids, binders or tablet-disintegrating agents; it can also be an encapsulating material. In powders, the carrier is a finely divided solid which is in admixture with the finely divided active ingredient. In tablets, the active ingredient is mixed with a carrier having the necessary compression properties in suitable proportions and compacted in the shape and size desired. The powders and tablets preferably contain up to 99% of the active ingredient. Suitable solid carriers include, for example, calcium phosphate, magnesium stearate, talc, sugars, lactose, dextrin, starch, gelatin, cellulose, polyvinylpyrrolidine, low melting waxes and ion exchange resins.

[0071] Liquid carriers are used in preparing solutions, suspensions, emulsions, syrups, elixirs and pressurized compositions. The active ingredient can be dissolved or suspended in a pharmaceutically acceptable liquid carrier such as water, an organic solvent, a mixture of both or pharmaceutically acceptable oils or fats. The liquid carrier can contain other suitable pharmaceutical additives such as solubilizers, emulsifiers, buffers, preservatives, sweeteners, flavoring agents, suspending agents, thickening agents, colors, viscosity regulators, stabilizers or osmoregulators. Suitable examples of liquid carriers for oral and parenteral administration include water (partially containing additives as above, e.g. cellulose derivatives, preferably sodium carboxymethyl cellulose solution), alcohols (including monohydric alcohols and polyhydric alcohols, e.g. glycols) and their derivatives, and oils (e.g. fractionated coconut oil and arachis oil). For parenteral administration, the carrier can also be an oily ester such as ethyl oleate or isopropyl myristate. Sterile liquid carriers are useful in sterile liquid form compositions for parenteral administration. The liquid carrier for pressurized compositions can be halogenated hydrocarbon or other pharmaceutically acceptable propellent.

[0072] Liquid pharmaceutical compositions which are sterile solutions or suspensions can be utilized by for example, intramuscular, intrathecal, epidural, intraperitoneal or subcutaneous injection. Sterile solutions can also be administered intravenously. The compounds may be prepared as a sterile solid composition which may be dissolved or suspended at the time of administration using sterile water, saline, or other appropriate sterile injectable medium. Carriers are intended to include necessary and inert binders, suspending agents, lubricants, flavorants, sweeteners, preservatives, dyes, and coatings.

[0073] This invention additionally provides a method of treating an abnormality in a subject wherein the abnormality is alleviated by increasing the activity of a mammalian SNORF11 receptor which comprises administering to the subject a compound which is a mammalian SNORF11 receptor agonist in an amount effective to treat the abnormality.

[0074] This invention provides a method of treating a subject suffering from an abnormality which comprises administering to the subject an amount of a SNORF11 receptor agonist effective to treat the subject's abnormality. This invention further provides a method of treating a subject suffering from pain, particularly chronic pain, chronic inflammatory pain or arthritic pain, which comprises administering to the subject an amount of a SNORF11 receptor agonist effective to treat the subject's pain.

[0075] In certain embodiments, the abnormality is pain. In another embodiment, the abnormality is chronic pain. In other embodiments, the abnormality is chronic inflammatory pain. In still other embodiments, the abnormality is arthritic pain.

[0076] In one embodiment, the mammalian SNORF11 receptor is a human SNORF11 receptor. In another embodiment, the human SNORF11 receptor has a sequence identical to the sequence of the human SNORF11 receptor-encoding nucleic acid contained in plasmid pEXJRHT3T7-hSNORF11-f (ATCC Accession No. 203806).

[0077] This invention further provides a method of treating an abnormality in a subject wherein the abnormality is alleviated by decreasing the activity of a mammalian SNORF11 receptor which comprises administering to the subject a compound which is a mammalian SNORF11 receptor antagonist in an amount effective to treat the abnormality.

[0078] This invention additionally provides the use of a mammalian SNORF11 receptor agonist for the preparation of a pharmaceutical composition for treating an abnormality in a subject, wherein the abnormality is alleviated by increasing the activity of a mammalian SNORF11 receptor. The subject invention further comprises administering to the subject a compound which is a mammalian SNORF11 receptor agonist in an amount effective to treat the abnormality.

[0079] In certain embodiments, the abnormality is pain. In another embodiment, the abnormality is chronic pain. In other embodiments, the abnormality is chronic inflammatory pain. In still other embodiments, the abnormality is arthritic pain.

[0080] In one embodiment, the mammalian SNORF11 receptor is a human SNORF11 receptor. In another embodiment, the human SNORF11 receptor has a sequence identical to the sequence of the human SNORF11 receptor-encoding nucleic acid contained in plasmid pEXJRHT3T7-hSNORF11-f (ATCC Accession No. 203806).

[0081] The SNORF11 receptor agonist (or “compound”) can be administered orally in the form of a sterile solution or suspension containing other solutes or suspending agents (for example, enough saline or glucose to make the solution isotonic), bile salts, acacia, gelatin, sorbitan monoleate, polysorbate 80 (oleate esters of sorbitol and its anhydrides copolymerized with ethylene oxide) and the like.

[0082] The SNORF11 receptor agonist can also be administered orally either in liquid or solid composition form. Compositions suitable for oral administration include solid forms, such as pills, capsules, granules, tablets, and powders, and liquid forms, such as solutions, syrups, elixirs, and suspensions. Forms useful for parenteral administration include sterile solutions, emulsions, and suspensions.

[0083] Optimal dosages to be administered may be determined by those skilled in the art, and will vary with the particular compound in use, the strength of the preparation, the mode of administration, and the advancement of the disease condition. Additional factors depending on the particular subject being treated will result in a need to adjust dosages, including subject age, weight, gender, diet, and time of administration.

[0084] In the subject invention a “therapeutically effective amount” is any amount of a compound which, when administered to a subject suffering from a disease against which the compounds are effective, causes reduction, remission, or regression of the disease. In the subject application, a “subject” is a vertebrate, a mammal, or a human.

[0085] Host Cells

[0086] A broad variety of host cells can be used to study heterologously expressed proteins. These cells include but are not limited to mammalian cell lines such as; Cos-7, CHO, LM(tk⁻), HEK293, etc.; insect cells lines such as; Sf9, Sf21, etc.; amphibian cells such as Xenopus oocytes; assorted yeast strains; assorted bacterial cell strains; and others. Culture conditions for each of these cell types is specific and is known to those familiar with the art.

[0087] Transient Expression

[0088] DNA encoding proteins to be studied can be transiently expressed in a variety of mammalian, insect, amphibian, yeast, bacterial and other cell lines by several transfection methods including but not limited to; calcium phosphate-mediated, DEAE-dextran mediated; liposomal-mediated, viral-mediated, electroporation-mediated, and microinjection delivery. Each of these methods may require optimization of assorted experimental parameters depending on the DNA, cell line, and the type of assay to be subsequently employed.

[0089] Stable Expression

[0090] Heterologous DNA can be stably incorporated into host cells, causing the cell to perpetually express a foreign protein. Methods for the delivery of the DNA into the cell are similar to those described above for transient expression but require the co-transfection of an ancillary gene to confer drug resistance on the targeted host cell. The ensuing drug resistance can be exploited to select and maintain cells that have taken up the DNA. An assortment of resistance genes are available including but not restricted to neomycin, kanamycin, and hygromycin. For the purposes of studies concerning the orphan receptor of this invention, stable expression of a heterologous receptor protein is typically carried out in, mammalian cells including but not necessarily restricted to, CHO, HEK293, LM(tk−), etc.

[0091] In addition native cell lines that naturally carry and express the nucleic acid sequences for the given orphan receptor may be used without the need to engineer the receptor complement.

[0092] Membrane Preparations

[0093] Cell membranes expressing the orphan receptor protein of this invention are useful for certain types of assays including but not restricted to ligand binding assays, GTPγ-S binding assays, and others. The specifics of preparing such cell membranes may in some cases be determined by the nature of the ensuing assay but typically involve harvesting whole cells and disrupting the cell pellet by sonication in ice cold buffer (e.g. 20 mM Tris-HCl, 5 mM EDTA, pH 7.4). The resulting crude cell lysate is cleared of cell debris by low speed centrifugation at 200×g for 5 min at 4° C. The cleared supernatant is then centrifuged at 40,000×g for 20 min at 4° C., and the resulting membrane pellet is washed by suspending in ice cold buffer and repeating the high speed centrifugation step. The final washed membrane pellet is resuspended in assay buffer. Protein concentrations are determined by the method of Bradford (1976) using bovine serum albumin as a standard. The membranes may be used immediately or frozen for later use.

[0094] Generation of Baculovirus

[0095] The coding region of DNA encoding the human receptor disclosed herein may be subcloned into pBlueBacIII into existing restriction sites or sites engineered into sequences 5′ and 3′ to the coding region of the polypeptides. To generate baculovirus, 0.5 μg of viral DNA (BaculoGold) and 3 μg of DNA construct encoding a polypeptide may be co-transfected into 2×10⁶ Spodoptera frugiperda insect Sf9 cells by the calcium phosphate co-precipitation method, as outlined by Pharmingen (in “Baculovirus Expression Vector System: Procedures and Methods Manual”). The cells then are incubated for 5 days at 27° C.

[0096] The supernatant of the co-transfection plate may be collected by centrifugation and the recombinant virus plaque purified. The procedure to infect cells with virus, to prepare stocks of virus and to titer the virus stocks are as described in Pharmingen's manual.

[0097] Labeled Ligand Binding Assays

[0098] Cells expressing the orphan receptor of this invention may be used to screen for ligands for said receptors, for example, by labeled ligand binding assays. Once a ligand is identified the same assays may be used to identify agonists or antagonists of the orphan receptor that may be employed for a variety of therapeutic purposes.

[0099] In an embodiment, labeled ligands are placed in contact with either membrane preparations or intact cells expressing the orphan receptor in multi-well microtiter plates, together with unlabeled compounds, and binding buffer. Binding reaction mixtures are incubated for times and temperatures determined to be optimal in separate equilibrium binding assays. The reaction is stopped by filtration through GF/B filters, using a cell harvester, or by directly measuring the bound ligand. If the ligand was labeled with a radioactive isotope such as ³H, ¹⁴C, ¹²⁵I, ³⁵S, ³²P, ³³P, etc., the bound ligand may be detected by using liquid scintillation counting, scintillation proximity, or any other method of detection for radioactive isotopes. If the ligand was labeled with a fluorescent compound, the bound labeled ligand may be measured by methods such as, but not restricted to, fluorescence intensity, time resolved fluorescence, fluorescence polarization, fluorescence transfer, or fluorescence correlation spectroscopy. In this manner agonist or antagonist compounds that bind to the orphan receptor may be identified as they inhibit the binding of the labeled ligand to the membrane protein or intact cells expressing the said receptor. Non-specific binding is defined as the amount of labeled ligand remaining after incubation of membrane protein in the presence of a high concentration (e.g., 100-1000×K_(D)) of unlabeled ligand. In equilibrium saturation binding assays membrane preparations or intact cells transfected with the orphan receptor are incubated in the presence of increasing concentrations of the labeled compound to determine the binding affinity of the labeled ligand. The binding affinities of unlabeled compounds may be determined in equilibrium competition binding assays, using a fixed concentration of labeled compound in the presence of varying concentrations of the displacing ligands.

[0100] Functional Assays

[0101] Cells expressing the orphan receptor DNA of this invention may be used to screen for ligands to said receptor using functional assays. Once a ligand is identified the same assays may be used to identify agonists or antagonists of the orphan receptor that may be employed for a variety of therapeutic purposes. It is well known to those in the art that the over-expression of a G-protein coupled receptor can result in the constitutive activation of intracellular signaling pathways. In the same manner, over-expression of the orphan receptor in any cell line as described above, can result in the activation of the functional responses described below, and any of the assays herein described can be used to screen for both agonist and antagonist ligands of the orphan receptor.

[0102] A wide spectrum of assays can be employed to screen for the presence of orphan receptor ligands. These assays range from traditional measurements of total inositol phosphate accumulation, cAMP levels, intracellular calcium mobilization, and potassium currents, for example; to systems measuring these same second messengers but which have been modified or adapted to be of higher throughput, more generic and more sensitive; to cell based assays reporting more general cellular events resulting from receptor activation such as metabolic changes, differentiation, cell division/proliferation. Description of several such assays follow.

Cyclic AMP (cAMP) Assay

[0103] The receptor-mediated stimulation or inhibition of cyclic AMP (cAMP) formation may be assayed in cells expressing the receptors. Cells are plated in 96-well plates or other vessels and preincubated in a buffer such as HEPES buffered saline (NaCl (150 mM), CaCl₂ (1 mM), KCl (5 mM), glucose (10 mM)) supplemented with a phosphodiesterase inhibitor such as 5 mM theophylline, with or without protease inhibitor cocktail (For example, a typical inhibitor cocktail contains 2 μg/ml aprotinin, 0.5 mg/ml leupeptin, and 10 μg/ml phosphoramidon.) for 20 min at 37° C., in 5% CO₂. Test compounds are added with or without 10 mM forskolin and incubated for an additional 10 min at 37° C. The medium is then aspirated and the reaction stopped by the addition of 100 mM HCl or other methods. The plates are stored at 4° C. for 15 min, and the cAMP content in the stopping solution is measured by radioimmunoassay. Radioactivity may be quantified using a gamma counter equipped with data reduction software. Specific modifications may be performed to optimize the assay for the orphan receptor or to alter the detection method of cAMP.

[0104] Arachidonic Acid Release Assay

[0105] Cells expressing the orphan receptor are seeded into 96 well plates or other vessels and grown for 3 days in medium with supplements. ³H-arachidonic acid (specific activity=0.75 μCi/ml) is delivered as a 100 μL aliquot to each well and samples are incubated at 37° C., 5% CO₂ for 18 hours. The labeled cells are washed three times with medium. The wells are then filled with medium and the assay is initiated with the addition of test compounds or buffer in a total volume of 250 μL. Cells are incubated for 30 min at 37° C., 5% CO₂. Supernatants are transferred to a microtiter plate and evaporated to dryness at 75° C. in a vacuum oven. Samples are then dissolved and resuspended in 25 μL distilled water. Scintillant (300 μL) is added to each well and samples are counted for ³H in a Trilux plate reader. Data are analyzed using nonlinear regression and statistical techniques available in the GraphPAD Prism package (San Diego, Calif.).

[0106] Intracellular Calcium Mobilization Assays

[0107] The intracellular free calcium concentration may be measured by microspectroflourometry using the fluorescent indicator dye Fura-2/AM (Bush et al, 1991). Cells expressing the receptor are seeded onto a 35 mm culture dish containing a glass coverslip insert and allowed to adhere overnight. Cells are then washed with HBS and loaded with 100 μL of Fura-2/AM (10 μM) for 20 to 40 min. After washing with HBS to remove the Fura-2/AM solution, cells are equilibrated in HBS for 10 to 20 min. Cells are then visualized under the 40× objective of a Leitz Fluovert FS microscope and fluorescence emission is determined at 510 nM with excitation wavelengths alternating between 340 nM and 380 nM. Raw fluorescence data are converted to calcium concentrations using standard calcium concentration curves and software analysis techniques.

[0108] In another method, the measurement of intracellular calcium can also be performed on a 96-well (or higher) format and with alternative calcium-sensitive indicators, preferred examples of these are: aequorin, Fluo-3, Fluo-4, Fluo-5, Calcium Green-1, Oregon Green, and 488 BAPTA. After activation of the receptors with agonist ligands the emission elicited by the change of intracellular calcium concentration can be measured by a luminometer, or a fluorescence imager; a preferred example of this is the fluorescence imager plate reader (FLIPR).

[0109] Cells expressing the receptor of interest are plated into clear, flat-bottom, black-wall 96-well plates (Costar) at a density of 30,000-80,000 cells per well and allowed to incubate over night at 5% CO₂, 37° C. The growth medium is aspirated and 100 μl of dye loading medium is added to each well. The loading medium contains: Hank's BSS (without phenol red) (Gibco), 20 mM HEPES (Sigma), 0.1% BSA (Sigma), dye/pluronic acid mixture (e.g. 1 mM Flou-3, AM (Molecular Probes), 10% pluronic acid (Molecular Probes); (mixed immediately before use), and 2.5 mM probenecid (Sigma)(prepared fresh)). The cells are allowed to incubate for about 1 hour at 5% CO₂, 37° C.

[0110] During the dye loading incubation the compound plate is prepared. The compounds are diluted in wash buffer (Hank's BSS without phenol red), 20 mM HEPES, 2.5 mM probenecid to a 3× final concentration and aliquoted into a clear v-bottom plate (Nunc). Following the incubation the cells are washed to remove the excess dye. A Denley plate washer is used to gently wash the cells 4 times and leave a 100 μl final volume of wash buffer in each well. The cell plate is placed in the center tray and the compound plate is placed in the right tray of the FLIPR. The FLIPR software is setup for the experiment, the experiment is run and the data are collected. The data are then analyzed using an excel spreadsheet program.

[0111] Antagonist ligands are identified by the inhibition of the signal elicited by agonist ligands.

[0112] Inositol Phosphate Assay

[0113] Receptor mediated activation of the inositol phosphate (IP) second messenger pathways may be assessed by radiometric or other measurement of IP products.

[0114] For example, in a 96 well microplate format assay, cells are plated at a density of 70,000 cells per well and allowed to incubate for 24 hours. The cells are then labeled with 0.5 μCi [³H]myo-inositol overnight at 37° C., 5% CO₂. Immediately before the assay, the medium is removed and replaced with 90 μL of PBS containing 10 mM LiCl. The plates are then incubated for 15 min at 37° C., 5% CO₂. Following the incubation, the cells are challenged with agonist (10 μl/well; 10× concentration) for 30 min at 37° C., 5% CO₂. The challenge is terminated by the addition of 100 μL of 50% v/v trichloroacetic acid, followed by incubation at 4° C. for greater than 30 minutes. Total IPs are isolated from the lysate by ion exchange chromatography. Briefly, the lysed contents of the wells are transferred to a Multiscreen HV filter plate (Millipore) containing Dowex AG1-X8 (200-400 mesh, formate form). The filter plates are prepared adding 100 μL of Dowex AG1-X8 suspension (50% v/v, water: resin) to each well. The filter plates are placed on a vacuum manifold to wash or elute the resin bed. Each well is first washed 2 times with 200 ul of 5 mM myo-inositol. Total [³H]inositol phosphates are eluted with 75 ul of 1.2M ammonium formate/0.1M formic acid solution into 96-well plates. 200 μL of scintillation cocktail is added to each well, and the radioactivity is determined by liquid scintillation counting.

[0115] GTPγS Functional Assay

[0116] Membranes from cells expressing the orphan receptor are suspended in assay buffer (e.g., 50 mM Tris, 100 mM NaCl, 5 mM MgCl₂, 10 μM GDP, pH 7.4) with or without protease inhibitors (e.g., 0.1% bacitracin). Membranes are incubated on ice for 20 minutes, transferred to a 96-well Millipore microtiter GF/C filter plate and mixed with GTPγ³⁵S (e.g., 250,000 cpm/sample, specific activity ˜1000 Ci/mmol) plus or minus unlabeled GTPγS (final concentration=100 μM). Final membrane protein concentration≈90 μg/ml. Samples are incubated in the presence or absence of test compounds for 30 min. at room temperature, then filtered on a Millipore vacuum manifold and washed three times with cold (4° C.) assay buffer. Samples collected in the filter plate are treated with scintillant and counted for 35S in a Trilux (Wallac) liquid scintillation counter. It is expected that optimal results are obtained when the receptor membrane preparation is derived from an appropriately engineered heterologous expression system, i.e., an expression system resulting in high levels of expression of the receptor and/or expressing G-proteins having high turnover rates (for the exchange of GDP for GTP). GTPγS assays are well-known to those skilled in the art, and it is contemplated that variations on the method described above, such as are described by Tian et al. (1994) or Lazareno and Birdsall (1993), may be used.

[0117] Microphysiometric Assay

[0118] Because cellular metabolism is intricately involved in a broad range of cellular events (including receptor activation of multiple messenger pathways), the use of microphysiometric measurements of cell metabolism can in principle provide a generic assay of cellular activity arising from the activation of any orphan receptor regardless of the specifics of the receptor's signaling pathway.

[0119] General guidelines for transient receptor expression, cell preparation and microphysiometric recording are described elsewhere (Salon, J. A. and Owicki, J. A., 1996). Typically cells expressing receptors are harvested and seeded at 3×10⁵ cells per microphysiometer capsule in complete media 24 hours prior to an experiment. The media is replaced with serum free media 16 hours prior to recording to minimize non-specific metabolic stimulation by assorted and ill-defined serum factors. On the day of the experiment the cell capsules are transferred to the microphysiometer and allowed to equilibrate in recording media (low buffer RPMI 1640, no bicarbonate, no serum (Molecular Devices Corporation, Sunnyvale, Calif.) containing 0.1% fatty acid free BSA), during which a baseline measurement of basal metabolic activity is established.

[0120] A standard recording protocol specifies a 100 μl/min flow rate, with a 2 min total pump cycle which includes a 30 sec flow interruption during which the acidification rate measurement is taken. Ligand challenges involve a 1 min 20 sec exposure to the sample just prior to the first post challenge rate measurement being taken, followed by two additional pump cycles for a total of 5 min 20 sec sample exposure. Typically, drugs in a primary screen are presented to the cells at 10 μM final concentration. Follow up experiments to examine dose-dependency of active compounds are then done by sequentially challenging the cells with a drug concentration range that exceeds the amount needed to generate responses ranging from threshold to maximal levels. Ligand samples are then washed out and the acidification rates reported are expressed as a percentage increase of the peak response over the baseline rate observed just prior to challenge.

[0121] MAP Kinase Assay

[0122] MAP kinase (mitogen activated kinase) may be monitored to evaluate receptor activation. MAP kinase is activated by multiple pathways in the cell. A primary mode of activation involves the ras/raf/MEK/MAP kinase pathway. Growth factor (tyrosine kinase) receptors feed into this pathway via SHC/Grb-2/SOS/ras. Gi coupled receptors are also known to activate ras and subsequently produce an activation of MAP kinase. Receptors that activate phospholipase C (such as Gq/G11-coupled) produce diacylglycerol (DAG) as a consequence of phosphatidyl inositol hydrolysis. DAG activates protein kinase C which in turn phosphorylates MAP kinase.

[0123] MAP kinase activation can be detected by several approaches. One approach is based on an evaluation of the phosphorylation state, either unphosphorylated (inactive) or phosphorylated (active). The phosphorylated protein has a slower mobility in SDS-PAGE and can therefore be compared with the unstimulated protein using Western blotting. Alternatively, antibodies specific for the phosphorylated protein are available (New England Biolabs) which can be used to detect an increase in the phosphorylated kinase. In either method, cells are stimulated with the test compound and then extracted with Laemmli buffer. The soluble fraction is applied to an SDS-PAGE gel and proteins are transferred electrophoretically to nitrocellulose or Immobilon. Immunoreactive bands are detected by standard Western blotting technique. Visible or chemiluminescent signals are recorded on film and may be quantified by densitometry.

[0124] Another approach is based on evaluation of the MAP kinase activity via a phosphorylation assay. Cells are stimulated with the test compound and a soluble extract is prepared. The extract is incubated at 30° C. for 10 min with gamma-³²P-ATP, an ATP regenerating system, and a specific substrate for MAP kinase such as phosphorylated heat and acid stable protein regulated by insulin, or PHAS-I. The reaction is terminated by the addition of H₃PO₄ and samples are transferred to ice. An aliquot is spotted onto Whatman P81 chromatography paper, which retains the phosphorylated protein. The chromatography paper is washed and counted for ³²P in a liquid scintillation counter. Alternatively, the cell extract is incubated with gamma-³²P-ATP, an ATP regenerating system, and biotinylated myelin basic protein bound by streptavidin to a filter support. The myelin basic protein is a substrate for activated MAP kinase. The phosphorylation reaction is carried out for 10 min at 30° C. The extract can then by aspirated through the filter, which retains the phosphorylated myelin basic protein. The filter is washed and counted for 32P by liquid scintillation counting.

[0125] Cell Proliferation Assay

[0126] Receptor activation of the orphan receptor may lead to a mitogenic or proliferative response which can be monitored via ³H-thymidine uptake. When cultured cells are incubated with ³H-thymidine, the thymidine translocates into the nuclei where it is phosphorylated to thymidine triphosphate. The nucleotide triphosphate is then incorporated into the cellular DNA at a rate that is proportional to the rate of cell growth. Typically, cells are grown in culture for 1-3 days. Cells are forced into quiescence by the removal of serum for 24 hrs. A mitogenic agent is then added to the media. 24 hrs later, the cells are incubated with ³H-thymidine at specific activities ranging from 1 to 10 uCi/ml for 2-6 hrs. Harvesting procedures may involve trypsinization and trapping of cells by filtration over GF/C filters with or without a prior incubation in TCA to extract soluble thymidine. The filters are processed with scintillant and counted for ³H by liquid scintillation counting. Alternatively, adherant cells are fixed in MeOH or TCA, washed in water, and solubilized in 0.05% deoxycholate/0.1 N NaOH. The soluble extract is transferred to scintillation vials and counted for ³H by liquid scintillation counting.

[0127] Alternatively, cell proliferation can be assayed by measuring the expression of an endogenous or heterologous gene product, expressed by the cell line used to transfect the orphan receptor, which can be detected by methods such as, but not limited to, florescence intensity, enzymatic activity, immunoreactivity, DNA hybridization, polymerase chain reaction, etc.

[0128] Promiscuous Second Messenger Assays

[0129] It is not possible to predict, a priori and based solely upon the GPCR sequence, which of the cell's many different signaling pathways any given orphan receptor will naturally use. It is possible, however, to coax receptors of different functional classes to signal through a pre-selected pathway through the use of promiscuous G_(α) subunits. For example, by providing a cell based receptor assay system with an endogenously supplied promiscuous G_(α) subunit such as G_(α15) or G_(α16) or a chimeric G_(α) subunit such as G_(αqz), a GPCR, which might normally prefer to couple through a specific signaling pathway (e.g., G_(s), G_(i), G_(q), G₀, etc.), can be made to couple through the pathway defined by the promiscuous G_(α) subunit and upon agonist activation produce the second messenger associated with that subunit's pathway. In the case of G_(α15), G_(α16) and/or G_(αqz) this would involve activation of the G_(q) pathway and production of the second messenger IP₃. Through the use of similar strategies and tools, it is possible to bias receptor signaling through pathways producing other second messengers such as Ca⁺⁺, cAMP, and K⁺ currents, for example (Milligan, 1999).

[0130] It follows that the promiscuous interaction of the exogenously supplied G_(α) subunit with the orphan receptor alleviates the need to carry out a different assay for each possible signaling pathway and increases the chances of detecting a functional signal upon receptor activation.

[0131] Methods for Recording Currents in Xenopus oocytes

[0132] Oocytes are harvested from Xenopus laevis and injected with mRNA transcripts as previously described (Quick and Lester, 1994; Smith et al.,1997). The test orphan receptor of this invention and Gα subunit RNA transcripts are synthesized using the T7 polymerase (“Message Machine,” Ambion) from linearized plasmids or PCR products containing the complete coding region of the genes. Oocytes are injected with 10 ng synthetic receptor RNA and incubated for 3-8 days at 17 degrees. Three to eight hours prior to recording, oocytes are injected with 500 pg promiscuous Gα subunits mRNA in order to observe coupling to Ca⁺⁺ activated Cl⁻ currents. Dual electrode voltage clamp (Axon Instruments Inc.) is performed using 3 M KCl-filled glass microelectrodes having resistances of 1-2 MOhm. Unless otherwise specified, oocytes are voltage clamped at a holding potential of −80 mV. During recordings, oocytes are bathed in continuously flowing (1-3 ml/min) medium containing 96 mM NaCl, 2 mM KCl, 1.8 mM CaCl₂, 1 mM MgCl₂, and 5 mM HEPES, pH 7.5 (ND96). Drugs are applied either by local perfusion from a 10 μl glass capillary tube fixed at a distance of 0.5 mm from the oocyte, or by switching from a series of gravity fed perfusion lines.

[0133] Other oocytes may be injected with a mixture of orphan receptor mRNAs and synthetic mRNA encoding the genes for G-protein-activated inward rectifier channels (GIRK1 and GIRK4, U.S. Pat. Nos. 5,734,021 and 5,728,535 or GIRK 1 and GIRK 2) or any other appropriate combinations (see, e.g., Inanobe et al., 1999). Genes encoding G-protein inwardly rectifying K⁺ (GIRK) channels 1, 2 and 4 (GIRK1, GIRK2, and GIRK4) may be obtained by PCR using the published sequences (Kubo et al., 1993; Dascal et al., 1993; Krapivinsky et al., 1995 and 1995b) to derive appropriate 5′ and 3′ primers. Human heart or brain cDNA may be used as template together with appropriate primers.

[0134] Heterologous expression of GPCRs in Xenopus oocytes has been widely used to determine the identity of signaling pathways activated by agonist stimulation (Gundersen et al., 1983; Takahashi et al., 1987). Activation of the phospholipase C (PLC) pathway is assayed by applying test compound in ND96 solution to oocytes previously injected with mRNA for the mammalian orphan receptor (with or without promiscuous G proteins) and observing inward currents at a holding potential of −80 mV. The appearance of currents that reverse at −25 mV and display other properties of the Ca⁺⁺-activated Cl⁻ (chloride) channel is indicative of mammalian receptor-activation of PLC and release of IP3 and intracellular Ca⁺⁺. Such activity is exhibited by GPCRs that couple to G_(q) or G₁₁.

[0135] Measurement of inwardly rectifying K⁺ (potassium) channel (GIRK) activity may be monitored in oocytes that have been co-injected with mRNAs encoding the mammalian orphan receptor plus GIRK subunits. GIRK gene products co-assemble to form a G-protein activated potassium channel known to be activated (i.e., stimulated) by a number of GPCRs that couple to G₁ or G_(o) (Kubo et al., 1993; Dascal et al., 1993). Oocytes expressing the mammalian orphan receptor plus the GIRK subunits are tested for test compound responsivity by measuring K⁺ currents in elevated K⁺ solution containing 49 mM K⁺.

[0136] This invention further provides an antibody capable of binding to a mammalian orphan receptor encoded by a nucleic acid encoding a mammalian orphan receptor. In one embodiment, the mammalian-orphan receptor is a rat orphan receptor. In another embodiment, the mammalian orphan receptor is a human orphan receptor. This invention also provides an agent capable of competitively inhibiting the binding of the antibody to a mammalian orphan receptor. In one embodiment, the antibody is a monoclonal antibody or antisera.

[0137] This invention also provides a nucleic acid probe comprising at least 15 nucleotides, which probe specifically hybridizes with a nucleic acid encoding a mammalian orphan receptor, wherein the probe has a sequence corresponding to a unique sequence present within one of the two strands of the nucleic acid encoding the mammalian orphan receptor and are contained in plasmid pEXJRHT3T7-hSNORF11-f (ATCC Accession No. 203806) or plasmid pcDNA3.1-rSNORF11-f (ATCC Accession No. 203807). This invention also provides a nucleic acid probe comprising at least 15 nucleotides, which probe specifically hybridizes with a nucleic acid encoding a mammalian orphan receptor, wherein the probe has a sequence corresponding to a unique sequence present within (a) the nucleic acid sequence shown in FIGS. 1A-1B (SEQ ID NO: 1) or (b) the reverse complement thereto. This invention also provides a nucleic acid probe comprising at least 15 nucleotides, which probe specifically hybridizes with a nucleic acid encoding a mammalian orphan receptor, wherein the probe has a sequence corresponding to a unique sequence present within (a) the nucleic acid sequence shown in FIGS. 3A-3B (SEQ ID NO: 3) or (b) the reverse complement thereto. In one embodiment, the nucleic acid is DNA. In another embodiment, the nucleic acid is RNA.

[0138] As used herein, the phrase “specifically hybridizing” means the ability of a nucleic acid molecule to recognize a nucleic acid sequence complementary to its own and to form double-helical segments through hydrogen bonding between complementary base pairs.

[0139] Methods of preparing and employing antisense oligonucleotides, antibodies, nucleic acid probes and transgenic animals directed to the orphan SNORF11 receptor are well known in the art. (See, for example, U.S. Pat. Nos. 5,053,337; 5,155,218; 5,360,735; 5,472,866; 5,476,782; 5,516,653; 5,545,549; 5,556,753; 5,595,880; 5,602,024; 5,639,652; 5,652,113; 5,661,024; 5,766,879; 5,786,155; and 5,786,157, the disclosures of which are hereby incorporated by reference in their entireties into this application.)

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1 4 1 1197 DNA HOMO SAPIENS 1 atgcacaccg tggctacgtc cggacccaac gcgtcctggg gggcaccggc caacgcctcc 60 ggctgcccgg gctgtggcgc caacgcctcg gacggcccag tcccttcgcc gcgggccgtg 120 gacgcctggc tcgtgccgct cttcttcgcg gcgctgatgc tgctgggcct ggtggggaac 180 tcgctggtca tctacgtcat ctgccgccac aagccgatgc ggaccgtgac caacttctac 240 atcgccaacc tggcggccac ggacgtgacc ttcctcctgt gctgcgtccc cttcacggcc 300 ctgctgtacc cgctgcccgg ctgggtgctg ggcgacttca tgtgcaagtt cgtcaactac 360 atccagcagg tctcggtgca ggccacgtgt gccactctga ccgccatgag tgtggaccgc 420 tggtacgtga cggtgttccc gttgcgcgcc ctgcaccgcc gcacgccccg cctggcgctg 480 gctgtcagcc tcagcatctg ggtaggctct gcggcggtgt ctgcgccggt gctcgccctg 540 caccgcctgt cacccgggcc gcgcgcctac tgcagtgagg ccttccccag ccgcgccctg 600 gagcgcgcct tcgcactgta caacctgctg gcgctgtacc tgctgccgct gctcgccacc 660 tgcgcctgct atgcggccat gctgcgccac ctgggccggg tcgccgtgcg ccccgcgccc 720 gccgatagcg ccctgcaggg gcaggtgctg gcagagcgcg caggcgccgt gcgggccaag 780 gtctcgcggc tggtggcggc cgtggtcctg ctcttcgccg cctgctgggg ccccatccag 840 ctgttcctgg tgctgcaggc gctgggcccc gcgggctcct ggcacccacg cagctacgcc 900 gcctacgcgc ttaagacctg ggctcactgc atgtcctaca gcaactccgc gctgaacccg 960 ctgctctacg ccttcctggg ctcgcacttc cgacaggcct tccgccgcgt ctgcccctgc 1020 gcgccgcgcc gcccccgccg cccccgccgg cccggaccct cggaccccgc agccccacac 1080 gcggagctgc tccgcctggg gtcccacccg gcccccgcca gggcgcagaa gccagggagc 1140 agtgggctgg ccgcgcgcgg gctgtgcgtc ctgggggagg acaacgcccc tctctga 1197 2 398 PRT HOMO SAPIENS 2 Met His Thr Val Ala Thr Ser Gly Pro Asn Ala Ser Trp Gly Ala Pro 1 5 10 15 Ala Asn Ala Ser Gly Cys Pro Gly Cys Gly Ala Asn Ala Ser Asp Gly 20 25 30 Pro Val Pro Ser Pro Arg Ala Val Asp Ala Trp Leu Val Pro Leu Phe 35 40 45 Phe Ala Ala Leu Met Leu Leu Gly Leu Val Gly Asn Ser Leu Val Ile 50 55 60 Tyr Val Ile Cys Arg His Lys Pro Met Arg Thr Val Thr Asn Phe Tyr 65 70 75 80 Ile Ala Asn Leu Ala Ala Thr Asp Val Thr Phe Leu Leu Cys Cys Val 85 90 95 Pro Phe Thr Ala Leu Leu Tyr Pro Leu Pro Gly Trp Val Leu Gly Asp 100 105 110 Phe Met Cys Lys Phe Val Asn Tyr Ile Gln Gln Val Ser Val Gln Ala 115 120 125 Thr Cys Ala Thr Leu Thr Ala Met Ser Val Asp Arg Trp Tyr Val Thr 130 135 140 Val Phe Pro Leu Arg Ala Leu His Arg Arg Thr Pro Arg Leu Ala Leu 145 150 155 160 Ala Val Ser Leu Ser Ile Trp Val Gly Ser Ala Ala Val Ser Ala Pro 165 170 175 Val Leu Ala Leu His Arg Leu Ser Pro Gly Pro Arg Ala Tyr Cys Ser 180 185 190 Glu Ala Phe Pro Ser Arg Ala Leu Glu Arg Ala Phe Ala Leu Tyr Asn 195 200 205 Leu Leu Ala Leu Tyr Leu Leu Pro Leu Leu Ala Thr Cys Ala Cys Tyr 210 215 220 Ala Ala Met Leu Arg His Leu Gly Arg Val Ala Val Arg Pro Ala Pro 225 230 235 240 Ala Asp Ser Ala Leu Gln Gly Gln Val Leu Ala Glu Arg Ala Gly Ala 245 250 255 Val Arg Ala Lys Val Ser Arg Leu Val Ala Ala Val Val Leu Leu Phe 260 265 270 Ala Ala Cys Trp Gly Pro Ile Gln Leu Phe Leu Val Leu Gln Ala Leu 275 280 285 Gly Pro Ala Gly Ser Trp His Pro Arg Ser Tyr Ala Ala Tyr Ala Leu 290 295 300 Lys Thr Trp Ala His Cys Met Ser Tyr Ser Asn Ser Ala Leu Asn Pro 305 310 315 320 Leu Leu Tyr Ala Phe Leu Gly Ser His Phe Arg Gln Ala Phe Arg Arg 325 330 335 Val Cys Pro Cys Ala Pro Arg Arg Pro Arg Arg Pro Arg Arg Pro Gly 340 345 350 Pro Ser Asp Pro Ala Ala Pro His Ala Glu Leu Leu Arg Leu Gly Ser 355 360 365 His Pro Ala Pro Ala Arg Ala Gln Lys Pro Gly Ser Ser Gly Leu Ala 370 375 380 Ala Arg Gly Leu Cys Val Leu Gly Glu Asp Asn Ala Pro Leu 385 390 395 3 1237 DNA Rattus norvegicus 3 tgaaggctgc ctggaggagg aggagggcga cagggccatg gccgcagagg cgacgttggg 60 tccgaacgtg agctggtggg ctccgtccaa cgcttcggga tgcccgggct gcggtgtcaa 120 tgcctcggat ggcccaggct ccgcgccaag gcccctggat gcctggctgg tgcccctgtt 180 tttcgctgcc ctaatgttgc tggggctagt cgggaactca ctggtcatct tcgttatctg 240 ccgccacaag cacatgcaga ccgtcaccaa tttctacatc gctaacctgg cggccacaga 300 tgtcactttc cttctgtgct gcgtaccctt caccgcgctc ctctatccgc tgcccacctg 360 ggtgctggga gacttcatgt gcaaattcgt caactacatc cagcaggtct cggtgcaagc 420 cacatgtgcc actttgacag ccatgagtgt ggaccgctgg tacgtgactg tgttcccgct 480 gcgtgcactt caccgccgca ctccgcgcct ggccctgact gtcagcctta gcatctgggt 540 gggttccgca gctgtttccg ccccggtgct ggctctgcac cgcctgtcgc ccgggcctca 600 cacctactgc agtgaggcgt ttcccagccg tgccctggag cgcgctttcg cgctctacaa 660 cctgctggcc ctatacctgc tgccgctgct cgccacctgc gcctgctacg gtgccatgct 720 gcgccacctg ggccgcgccg ctgtacgccc cgcacccact gatggcgccc tgcaggggca 780 gctgctagca cagcgcgctg gagcagtgcg caccaaggtc tcccggctgg tggccgctgt 840 cgtcctgctc ttcgccgcct gctggggccc gatccagctg ttcctggtgc ttcaagccct 900 gggcccctcg ggggcctggc accctcgaag ctatgccgcc tacgcgctca agatctgggc 960 tcactgcatg tcctacagca attctgcgct caacccgctg ctctatgcct tcctgggttc 1020 ccacttcaga caggccttct gccgcgtgtg cccctgcggc ccgcaacgcc agcgtcggcc 1080 ccacgcgtca gcgcactcgg accgagccgc accccatagt gtgccgcaca gccgggctgc 1140 gcaccctgtc cgggtcagga cccccgagcc tgggaaccct gtggtgcgct cgccctctgt 1200 tcaggatgaa cacactgccc cactctgagc tgcccct 1237 4 396 PRT Rattus norvegicus 4 Met Ala Ala Glu Ala Thr Leu Gly Pro Asn Val Ser Trp Trp Ala Pro 1 5 10 15 Ser Asn Ala Ser Gly Cys Pro Gly Cys Gly Val Asn Ala Ser Asp Gly 20 25 30 Pro Gly Ser Ala Pro Arg Pro Leu Asp Ala Trp Leu Val Pro Leu Phe 35 40 45 Phe Ala Ala Leu Met Leu Leu Gly Leu Val Gly Asn Ser Leu Val Ile 50 55 60 Phe Val Ile Cys Arg His Lys His Met Gln Thr Val Thr Asn Phe Tyr 65 70 75 80 Ile Ala Asn Leu Ala Ala Thr Asp Val Thr Phe Leu Leu Cys Cys Val 85 90 95 Pro Phe Thr Ala Leu Leu Tyr Pro Leu Pro Thr Trp Val Leu Gly Asp 100 105 110 Phe Met Cys Lys Phe Val Asn Tyr Ile Gln Gln Val Ser Val Gln Ala 115 120 125 Thr Cys Ala Thr Leu Thr Ala Met Ser Val Asp Arg Trp Tyr Val Thr 130 135 140 Val Phe Pro Leu Arg Ala Leu His Arg Arg Thr Pro Arg Leu Ala Leu 145 150 155 160 Thr Val Ser Leu Ser Ile Trp Val Gly Ser Ala Ala Val Ser Ala Pro 165 170 175 Val Leu Ala Leu His Arg Leu Ser Pro Gly Pro His Thr Tyr Cys Ser 180 185 190 Glu Ala Phe Pro Ser Arg Ala Leu Glu Arg Ala Phe Ala Leu Tyr Asn 195 200 205 Leu Leu Ala Leu Tyr Leu Leu Pro Leu Leu Ala Thr Cys Ala Cys Tyr 210 215 220 Gly Ala Met Leu Arg His Leu Gly Arg Ala Ala Val Arg Pro Ala Pro 225 230 235 240 Thr Asp Gly Ala Leu Gln Gly Gln Leu Leu Ala Gln Arg Ala Gly Ala 245 250 255 Val Arg Thr Lys Val Ser Arg Leu Val Ala Ala Val Val Leu Leu Phe 260 265 270 Ala Ala Cys Trp Gly Pro Ile Gln Leu Phe Leu Val Leu Gln Ala Leu 275 280 285 Gly Pro Ser Gly Ala Trp His Pro Arg Ser Tyr Ala Ala Tyr Ala Leu 290 295 300 Lys Ile Trp Ala His Cys Met Ser Tyr Ser Asn Ser Ala Leu Asn Pro 305 310 315 320 Leu Leu Tyr Ala Phe Leu Gly Ser His Phe Arg Gln Ala Phe Cys Arg 325 330 335 Val Cys Pro Cys Gly Pro Gln Arg Gln Arg Arg Pro His Ala Ser Ala 340 345 350 His Ser Asp Arg Ala Ala Pro His Ser Val Pro His Ser Arg Ala Ala 355 360 365 His Pro Val Arg Val Arg Thr Pro Glu Pro Gly Asn Pro Val Val Arg 370 375 380 Ser Pro Ser Val Gln Asp Glu His Thr Ala Pro Leu 385 390 395 

What is claimed is:
 1. A method of treating a subject suffering from an abnormality which comprises administering to the subject an amount of a SNORF11 receptor agonist effective to treat the subject's abnormality.
 2. The method of claim 1, wherein the abnormality is pain.
 3. The method of claim 1, wherein the abnormality is chronic pain.
 4. The method of claim 1, wherein the abnormality is chronic inflammatory pain.
 5. The method of claim 1, wherein the abnormality is arthritic pain. 